Mobility ( → increase)
The structure is colored based on the size of fluctuations driven by the slowest two modes.
Results for your structure 1A30.pdb:
Functional Sites Based on Dynamics:
Input file and parameters:
PDB title: HIV-1 PROTEASE COMPLEXED WITH A TRIPEPTIDE INHIBITOR
PDB: 1A30, chain: AB, model No.: 1
Exp. method: X-RAY DIFFRACTION (2.00 Å)
Cutoff for GNM nodes: 7.3 Å
Distance scaling factor: 0
Number of system nodes: 198
Reference: Li,H., Chang,YY, Lee,JY, Bahar,I. and Yang,LW. (2017) DynOmics: dynamics of structural proteome and beyond. Nucleic Acids Res., 45, W374-W380.
The server is maintained by Dr. Hongchun Li in the Bahar Lab at the Department of Computational & Systems Biology at the University of Pittsburgh, School of Medicine, and sponsored by the NIH awards #5R01GM099738-04 and #5P41GM103712-03 and the funding #104-2113-M-007-019 from MOST to the Yang lab at the National Tsing Hua University, Taiwan.