Collective Motions of 5FN2.pdb
Mobility ( → increase)
The structure is colored based on the size of fluctuations driven by the ANM slow modes.
The correlation cosine between the ANM modes predicted with and w/o environment.
type: size: px
Motion along mode with RMSD: Å
NMD file -> download and view ANM in VMD
Input file and parameters:
PDB title: CRYO-EM STRUCTURE OF GAMMA SECRETASE IN COMPLEX WITH A DRUG DAPT
PDB: 5FN2.pdb, chain: all, model No.: 1
Exp. method: N/A
Total number of nodes in the network: 1309
Cutoff for GNM nodes: 7.3 Å
Distance scaling factor: 0
MembrANM: model with CG-membrane
Reference: Li,H., Chang,YY, Lee,JY, Bahar,I. and Yang,LW. (2017) DynOmics: dynamics of structural proteome and beyond. Nucleic Acids Res., 45, W374-W380.
The server is maintained by Dr. Hongchun Li in the Bahar Lab at the Department of Computational & Systems Biology at the University of Pittsburgh, School of Medicine, and sponsored by the NIH awards #5R01GM099738-04 and #5P41GM103712-03 and the funding #104-2113-M-007-019 from MOST to the Yang lab at the National Tsing Hua University, Taiwan.
For questions and comments please contact Hongchun Li.